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1

Base-base mismatches. Thermodynamics of double helix formation for dCA 3 XA 3 G + dCT 3 YT 3 G (X, Y = A,C,G,D

Aboul-ela, Fareed, Koh, David, Tinoco, Ignacio, Martin, Francis H.

Journal:

Nucleic Acids Research

Year:

1985

Language:

english

File:

PDF, 452 KB

english, 1985

2

Energy landscape analysis for regulatory RNA finding using scalable distributed cyberinfrastructure

Joohyun Kim, Wei Huang, Sharath Maddineni, Fareed Aboul-ela, Shantenu Jha

Journal:

Concurrency and Computation: Practice and Experience

Year:

2011

Language:

english

File:

PDF, 724 KB

english, 2011

3

Novel techniques in nuclear magnetic resonance for nucleic acids

Fareed Aboul-ela, Gabriele Varani

Journal:

Current Opinion in Biotechnology

Year:

1995

Language:

english

File:

PDF, 790 KB

english, 1995

4

Structural Basis for Contrasting Activities of Ribosome Binding Thiazole Antibiotics

Georg Lentzen, Roscoe Klinck, Natalia Matassova, Fareed Aboul-ela, Alastair I.H. Murchie

Journal:

Chemistry & Biology

Year:

2003

Language:

english

File:

PDF, 429 KB

english, 2003

5

Novel three-dimensional1H−13C−31P triple resonance experiments for sequential backbone correlations in nucleic acids

Gabriele Varani, Fareed Aboul-ela, Frederic Allain, Charles C. Gubser

Journal:

Journal of Biomolecular NMR

Year:

1995

Language:

english

File:

PDF, 511 KB

english, 1995

6

NMR investigation of RNA structure

Gabriele Varani, Fareed Aboul-ela, Frédéric H.-T. Allain

Journal:

Progress in Nuclear Magnetic Resonance Spectroscopy

Year:

1996

Language:

english

File:

PDF, 7.51 MB

english, 1996

7

NMR study of parallel-stranded tetraplex formation by the hexadeoxynucleotide d(TG4T)

Aboul-ela, Fareed, Murchie, Alastair I. H., Lilley, David M. J.

Journal:

Year:

1992

File:

PDF, 315 KB

1992

8

A conserved RNA structure within the HCV IRES eIF3-binding site

Collier, Adam J., Gallego, José, Klinck, Roscoe, Cole, Paul T., Harris, Stephen J., Harrison, Geoffrey P., Aboul-ela, Fareed, Varani, Gabriele, Walker, Stephen

Journal:

Natural Structural Biology

Year:

2002

Language:

english

File:

PDF, 1.91 MB

english, 2002

9

Helix opening transitions in supercoiled DNA

Alastair I.H. Murchie, Richard Bowater, Fareed Aboul-ela, David M.J. Lilley

Journal:

Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression

Year:

1992

Language:

english

File:

PDF, 1.62 MB

english, 1992

10

Towards the discovery of drug-like RNA ligands?

Nicolas Foloppe, Natalia Matassova, Fareed Aboul-ela

Journal:

Drug Discovery Today

Year:

2006

Language:

english

File:

PDF, 787 KB

english, 2006

11

Recognition of HIV-1 TAR RNA by Tat protein and Tat-derived peptides

Fareed Aboul-ela, Gabriele Varani

Journal:

Journal of Molecular Structure: THEOCHEM

Year:

1998

Language:

english

File:

PDF, 427 KB

english, 1998

12

Nuclear Magnetic Resonance Study of a Deoxyoligonucleotide Duplex Containing a Three Base Bulge

Fareed Aboul-Ela, Alastair I.H. Murchie, Steven W. Homans, David M.J. Lilley

Journal:

Journal of Molecular Biology

Year:

1993

File:

PDF, 728 KB

1993

13

Solution Structure of a Parallel-stranded Tetraplex Formed by d(TG4T) in the Presence of Sodium Ions by Nuclear Magnetic Resonance Spectroscopy

Fareed Aboul-ela, Alastair I.H. Murchie, David G. Norman, David M.J. Lilley

Journal:

Journal of Molecular Biology

Year:

1994

File:

PDF, 847 KB

1994

14

The Structure of the Human Immunodeficiency Virus Type-1 TAR RNA Reveals Principles of RNA Recognition by Tat Protein

Fareed Aboul-ela, Jonathan Karn, Gabriele Varani

Journal:

Journal of Molecular Biology

Year:

1995

Language:

english

File:

PDF, 4.21 MB

english, 1995

15

Distinguishing between duplex and hairpin forms of RNA by 15N1H heteronuclear NMR

Fareed Aboul-ela, Edward P. Nikonowicz, Arthur Pardi

Journal:

Year:

1994

Language:

english

File:

PDF, 399 KB

english, 1994

16

Rational Design of Inhibitors of HIV-1 TAR RNA through the Stabilisation of Electrostatic “Hot Spots”

Ben Davis, Mohammad Afshar, Gabriele Varani, Alastair I.H. Murchie, Jonathan Karn, Georg Lentzen, Martin Drysdale, Justin Bower, Andrew J. Potter, Ian D. Starkey, Terry Swarbrick, Fareed Aboul-ela

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 2.01 MB

english, 2004

17

Conformational Heterogeneity of the SAM-I Riboswitch Transcriptional ON State: A Chaperone-Like Role for S-Adenosyl Methionine

Wei Huang, Joohyun Kim, Shantenu Jha, Fareed Aboul-ela

Journal:

Journal of Molecular Biology

Year:

2012

Language:

english

File:

PDF, 2.07 MB

english, 2012

18

Corrigendum to “Conformational Heterogeneity of the SAM-I Riboswitch Transcriptional ON State: A Chaperone-Like Role for S-Adenosyl Methionine” [J. Mol. Biol. 418 (2012) 331–349]

Wei Huang, Joohyun Kim, Shantenu Jha, Fareed Aboul-ela

Journal:

Journal of Molecular Biology

Year:

2012

Language:

english

File:

PDF, 77 KB

english, 2012

19

Design and Implementation of an Ribonucleic Acid (RNA) Directed Fragment Library ∥

Bodoor, Khaled, Boyapati, Vamsi, Gopu, Vikram, Boisdore, Marietta, Allam, Kiran, Miller, Janae, Treleaven, W. Dale, Weldeghiorghis, Thomas, Aboul-ela, Fareed

Journal:

Journal of Medicinal Chemistry

Year:

2009

Language:

english

File:

PDF, 1.69 MB

english, 2009

20

An Inhibitor of the Tat/TAR RNA Interaction that Effectively Suppresses HIV-1 Replication

Francois Hamy, Eduard R. Felder, Gerhard Heizmann, Jains Lazdins, Fareed Aboul-Ela, Gabriele Varani, Jonathan Karn and Thomas Klimkait

Journal:

Proceedings of the National Academy of Sciences

Year:

1997

Language:

english

File:

PDF, 1.69 MB

english, 1997

21

Large-scale stable opening of supercoiled DNA in response to temperature and supercoiling in (A + T)-rich regions that promote low-salt cruciform extrusion. [Erratum to document cited in CA115(25):273674n]

Bowater, Richard, Aboul-Ela, Fareed, Lilley, David M. J.

Journal:

Year:

1992

Language:

english

File:

PDF, 265 KB

english, 1992

22

Large-scale stable opening of supercoiled DNA in response to temperature and supercoiling in (A + T)-rich regions that promote low-salt cruciform extrusion

Bowater, Richard, Aboul-Ela, Fareed, Lilley, David M. J.

Journal:

Year:

1991

Language:

english

File:

PDF, 4.23 MB

english, 1991

23

Site-Specific Cross-Linking of Amino Acids in the Basic Region of Human Immunodeficiency Virus Type 1 Tat Peptide to Chemically Modified TAR RNA Duplexes

Farrow, Mark A., Aboul-ela, Fareed, Owen, David, Karpeisky, Alexander, Beigelman, Leonid, Gait, Michael J.

Journal:

Year:

1998

Language:

english

File:

PDF, 244 KB

english, 1998

24

B-Z Cooperativity and Kinetics of Poly(dG-m 5 dC) are Controlled by an Unfavorable B-Z Interface Energy

Walker, G. Terrance, Aboul-ela, Fareed

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1988

Language:

english

File:

PDF, 658 KB

english, 1988

25

The Impact of a Ligand Binding on Strand Migration in the SAM-I Riboswitch

Huang, Wei, Kim, Joohyun, Jha, Shantenu, Aboul-ela, Fareed, MacKerell, Alexander Donald

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 2.20 MB

english, 2013

26

Strategies for the design of RNA-binding small molecules

Aboul-ela, Fareed

Journal:

Future Medicinal Chemistry

Year:

2010

Language:

english

File:

PDF, 1.33 MB

english, 2010

27

Large-scale opening of A+T rich regions within supercoiled DNA molecules is suppressed by salt

Bowater, Richard P., Aboul-ela, Fareed, Lilley, David M.J.

Journal:

Nucleic Acids Research

Year:

1994

Language:

english

File:

PDF, 2.61 MB

english, 1994

28

[ACM Press the 19th ACM International Symposium - Chicago, Illinois (2010.06.21-2010.06.25)] Proceedings of the 19th ACM International Symposium on High Performance Distributed Computing - HPDC '10 - Exploring the RNA folding energy landscape using scalable distributed cyberinfrastructure

Kim, Joohyun, Huang, Wei, Maddineni, Sharath, Aboul-ela, Fareed, Jha, Shantenu

Year:

2010

Language:

english

File:

PDF, 1.20 MB

english, 2010

29

Linking aptamer-ligand binding and expression platform folding in riboswitches: prospects for mechanistic modeling and design

Aboul-ela, Fareed, Huang, Wei, Abd Elrahman, Maaly, Boyapati, Vamsi, Li, Pan

Journal:

Wiley Interdisciplinary Reviews: RNA

Year:

2015

Language:

english

File:

PDF, 1.29 MB

english, 2015

30

Targeting the A site RNA of the Escherichia coli ribosomal 30 S subunit by 2′-O-methyl oligoribonucleotides: a quantitative equilibrium dialysis binding assay and differential effects of aminoglycoside antibiotics

ABELIAN, Arthur, WALSH, Andrew P., LENTZEN, Georg, ABOUL-ELA, Fareed, GAIT, Michael J.

Journal:

Biochemical Journal

Year:

2004

Language:

english

File:

PDF, 943 KB

english, 2004

31

Structure of a hepatitis C virus IRES RNA motif recognized by translation initiation factor 3

Gallego, José, Klinck, Roscoe, Collier, A., Harrison, G., Harris, S., Cole, Paul T., Aboul-Ela, Fareed, Varani, Gabriele, Walker, S.

Journal:

Biochemical Society Transactions

Year:

2002

Language:

english

File:

PDF, 117 KB

english, 2002

32

A potential RNA drug target in the hepatitis C virus internal ribosomal entry site

KLINCK, ROSCOE, WESTHOF, ERIC, WALKER, STEPHEN, AFSHAR, MOHAMMAD, COLLIER, ADAM, ABOUL-ELA, FAREED

Journal:

Year:

2000

File:

PDF, 2.21 MB

2000